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That is a default haplotype textual content file format utilized by IMPUTE2 to encode the haplotypes from the one,000 Genomes Project. Precise facts regarding the file structure can be found below.

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* Minimal: When output window coordinates are not consistent with input window coordinates, These are immediately fastened

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Note also that SHAPEIT haploid heterozygous as missing facts. Furthermore, it generates two extra log files that help the consumer to spot any difficulties. If the principle log file is gwas.phased.log, They are really:

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A facet product or service on the duoHMM method is usually that it can be employed to detect recombination events and non-mendelian genotyping problems. If this is the variety of analysis that you'd like to carryout then we offer a stand on your own implementation from the duoHMM approach here.

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